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STP Phase 2 for small employers: what you report and why

STP Phase 2 reports the same pay run in more detail: gross pay is broken into components, and each employee carries an employment basis and, when they leave, a cessation reason.

8 min read · Last reviewed 2026-09-27

On this page

  1. 1.Disaggregation of gross: the main change
  2. 2.Employment basis
  3. 3.Cessation reason
  4. 4.End-of-year finalisation
  5. 5.If you are a very small employer

Single Touch Payroll means your payroll software tells the ATO about each pay run at the time you run it, rather than you filing a summary once a year. Phase 2 did not change when you report. It changed how much detail goes in the report.

If you employ one to five people, the practical effect is that your payroll setup has to be more precise than it used to be. Phase 2 punishes vague pay item configuration, because a lump labelled "wages" now has to be resolved into its parts.

Disaggregation of gross: the main change

Under Phase 1 you reported one gross figure per employee. Under Phase 2 that figure is broken into its components, and each component is reported separately on every pay event where it occurs. The components include:

  • Gross salary and wages
  • Paid leave
  • Overtime
  • Bonuses and commissions
  • Directors' fees
  • Return-to-work payments
  • Salary sacrifice amounts
  • Allowances, itemised by type

The reason for the detail is not tax. It is that the ATO shares this data with Services Australia, the Department of Social Services and the Department of Veterans' Affairs, and those agencies treat the components differently. Overtime and paid leave affect an income-support assessment differently from base wages, so they can no longer be reported as one number.

Note: What this means in your payroll setup

Every pay item you use needs to be mapped to the right Phase 2 classification once, correctly. An allowance filed as ordinary wages, or leave paid out of a generic wages item, produces a technically compliant submission that reports the wrong thing. This is the most common Phase 2 problem and it is a configuration problem, not a software problem.

Employment basis

Each employee now carries an employment basis in the STP report — full-time, part-time, casual, and the other categories the ATO defines, including labour hire and non-employee arrangements. This used to be information you held in your own records and nobody else's.

It matters more than it looks, because the basis you report should agree with how you are actually treating the person: their leave accrual, their loading, their super. A casual reported as full-time is a discrepancy waiting to be noticed.

For reference, the National Employment Standards give full-time employees 4 weeks of paid annual leave a year — 152 hours for a 38-hour week — and 10 days of paid personal/carer's leave a year, which accrues progressively and is a single balance covering both sick leave and carer's leave. Casuals do not accrue either.

Cessation reason

When someone leaves, Phase 2 requires you to report a cessation date and a cessation reason code — resignation, redundancy, dismissal, contract end, and so on. Getting the code right matters because it flows into the former employee's dealings with Services Australia.

The upside is that Phase 2 largely removed the need for a separate employment separation certificate, because the reason is already in the STP data.

We are not certain: We do not list the codes here on purpose

The cessation type and income type code sets are long and the ATO revises them. A stale list in a marketing guide is worse than no list. Use the ATO's Phase 2 employer reporting guidelines, linked at the foot of this page, for the current codes — or let your payroll software present the current set.

End-of-year finalisation

STP replaced payment summaries. Instead of giving employees a form, you make a finalisation declaration confirming the year's reported data is complete and correct. That marks each employee's income statement as Tax ready in myGov, and employees should wait for that status before lodging their own return.

WhoFinalisation due
Arm's length employees14 July
Closely held payees (e.g. family members in a family business)30 September

If you have both, you still have to finalise your arm's length employees by 14 July — the later date applies only to the closely held payees. If you genuinely cannot finalise by the due date, you need to apply to the ATO for a deferral rather than simply lodging late.

Watch out: 14 July is earlier than it feels

It lands two weeks after the financial year ends, in the same fortnight as your Q4 BAS preparation and your last quarterly super run. Do your payroll reconciliation in June, not July — see the EOFY checklist.

If you are a very small employer

There is no small-employer exemption from Phase 2. Employers with four or fewer employees, and businesses paying only closely held payees, have had concessions about *how* and *how often* they report in the past, but the Phase 2 data set itself is not optional.

What *is* true is that the smaller you are, the more of the Phase 2 burden is one-off. Map your pay items once, set each employee's basis once, and the ongoing work is running payroll as normal.

Phase 2 health check

  • Every pay item is mapped to a Phase 2 classification, and you can say what each one maps to.
  • Allowances are itemised by type rather than lumped into a single "allowances" item.
  • Paid leave is paid through a leave item, not a generic wages item.
  • Salary sacrifice arrangements are recorded as salary sacrifice, not as reduced gross.
  • Every employee has the correct employment basis recorded.
  • Every employee has a TFN declaration on file and the correct tax treatment applied.
  • You know where in your software the finalisation declaration lives, before 14 July.

Note: Where Ledgable helps

Ledgable's payroll is built around the Phase 2 data set — pay item presets carry their classification, and employee records carry employment basis and cessation details. Ledgable prepares and exports your STP reporting; direct transmission to the ATO is on our roadmap rather than live, so today you lodge through your existing channel.

Pay item presets carry their Phase 2 classification, and employee records carry employment basis and cessation details.

See Ledgable payroll

Common questions

Disaggregation of gross. Phase 1 reported a single gross figure per employee; Phase 2 breaks it into components - salary and wages, paid leave, overtime, bonuses and commissions, directors' fees, salary sacrifice and itemised allowances - each reported separately on every pay event.
Because the data is shared with Services Australia, the Department of Social Services and the Department of Veterans' Affairs, which treat the components differently when assessing income support. Overtime and paid leave are not equivalent to base wages for those purposes.
14 July for arm's length employees. If you also have closely held payees, their finalisation is due by 30 September - but the 14 July date still applies to your arm's length employees.
Yes. There is no exemption from the Phase 2 data set based on employee numbers. Concessions have existed around how and how often the smallest employers report, but the detail required in a report is the same.
No. STP replaced payment summaries. Once you make your finalisation declaration, each employee's income statement shows as 'Tax ready' in myGov and they use that to lodge their return.
Largely, yes. Because Phase 2 reports a cessation date and cessation reason code when someone leaves, the information a separation certificate carried is already in the STP data.

Sources

Every rate, threshold and due date in this guide was checked against the pages below on the dates shown. Tax rules change — verify against the ATO before you rely on anything here, and get advice for your own situation.

  • Expanding Single Touch Payroll (Phase 2) — checked 2026-09-27
  • Disaggregation of gross - STP Phase 2 employer reporting guidelines — checked 2026-09-27
  • End-of-year finalisation through STP — checked 2026-09-27

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